Update masurca: adding missing dependencies#64293
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mencian merged 12 commits intobioconda:masterfrom Apr 10, 2026
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Both conda package and docker locally tested and producing expected outputs. |
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Found problem when testing docker container with jump reads: Attempting to resolve by adding |
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Tested locally with both conda and docker with the following input combinations:
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chaitanyakasaraneni
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Apr 10, 2026
* adding missing dependencies
* python
* pin c_stdlib and openssl to try resolve hash mismatch
* remove conda_build_config.yaml to check if the hash mismatch problem gets resolved
* adding conda_build_config.yaml back
* remove {{ stdlib(c) }} originally added due to linting error
* adding skip-lints due to hash problems
* fix hardcoded perl shebangs to use env
* adding gzip to run dependencies
* adding coreutils to run dependencies
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I'm updating the recipe for masurca as building its nf-core module we realised some dependencies are missing, causing the biocontainer associated with this recipe to not be functional: nf-core/modules#11049
added dependencies:
- cmake
- xz
- ncurses
- openssl
- gdbm
- python
- file
- gzip
- coreutils
Also, I added:
as seen in other recipes, as bioconda/bioconda-utils#1095 (comment) still appears to be an issue
Please read the guidelines for Bioconda recipes before opening a pull request (PR).
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